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12/16/2025 | Press release | Distributed by Public on 12/16/2025 04:27

From Wish to Reality — The Gene Therapy Initiative at UC San Diego

Published Date

December 16, 2025

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In 2003, while out to lunch with her mother on the eve of her twelfth birthday, Natalie Stack Morgan wrote a wish on a restaurant napkin: "to have my disease go away forever."

That disease was cystinosis, a rare genetic disorder that causes the amino acid cystine to accumulate in the body and damage cells. Though cystinosis is rare - affecting just 500 people in the U.S. and 2,500 worldwide - its impact is profound. Over time, the accumulated cystine slowly destroys virtually all of the body's organs, including the kidneys, eyes, liver, pancreas and even the brain. With treatment, the average life expectancy of somebody with cystinosis is approximately 28 years. Without treatment, most don't live past childhood.

Today, after receiving a gene therapy developed at the University of California San Diego, Natalie is thriving at 34 years old. She's built a career as a social worker, is happily married and recently became a mother - milestones that are often out of reach for people with cystinosis.

"I was scared at first, but after the stem-cell transplant, I have far more energy, take only a fraction of the pills I used to need, and can finally plan a future with a family," she said.

The therapy that changed Natalie's life is the culmination of years of dedicated research and a decades-long partnership between her family, the Cystinosis Research Foundation and UC San Diego. This partnership continues to flourish through the Gene Therapy Initiative (GTI), which was founded in 2023 with a $5 million gift from Natalie's parents, Nancy and Jeff Stack, and supports innovative gene therapy research projects across campus.

"Our goal with the Gene Therapy Initiative is to provide the infrastructure to move discoveries from the bench to the bedside as quickly as possible," said Stephanie Cherqui, Ph.D., who discovered the gene therapy Natalie received and co-directs the GTI alongside Alysson Muotri, Ph.D. "We've made great strides in cystinosis thanks to the Cystinosis Research Foundation and the Stacks' support, and now we're able to expand this to many other diseases with their continued partnership."

A call to action

When Natalie made her fateful wish, the Stack family had already been part of the UC San Diego community for a decade through Natalie's doctors at UC San Diego Health, including Jerry Schneider, M.D., one of the world's foremost experts on cystinosis. In the 1970s, Schneider played a key role in developing and testing the first treatment for cystinosis - a drug called cysteamine, which helps manage symptoms but isn't a cure. Cysteamine is a life-saving treatment, but it has its drawbacks - it tastes terrible, has unpleasant side effects, and must be taken every six hours, without fail, for life.

"We would wake Natalie up at 11 p.m. and 5 a.m. every single night," recalled Stack. "Some nights when she was a child, she'd be kicking and screaming and we'd have to force her to take the medication. It was miserable, but we saw it as our job. There just wasn't a choice. There are no days off with cystinosis."

For Nancy and Jeff, Natalie's wish was a call to action. Shortly after that fateful lunch, they started the Cystinosis Research Foundation, which has since raised more than $73 million for cystinosis and funded hundreds of studies worldwide The Foundation has also provided a beacon of hope for families living with cystinosis around the world.

"What I love about this community is that it feels like a family," said Nancy Stack. Families support each other through the ups and downs, and that sense of belonging and shared purpose keeps us motivated to fund research, volunteer for clinical trials, and keep hope alive, even when the disease is daunting."

In 2023, Jeff and Nancy Stack made a $5 million gift to establish the UC San Diego Gene Therapy Initiative through the Nancy and Geoffrey Stack Foundation. Credit: Nancy and Geoffrey Stack Foundation.

One of the great achievements of the Foundation was their support of the discovery and testing of a new cystinosis drug, a time-released version of Cysteamine that can be taken every 12 hours instead of every six. This discovery was made at UC San Diego by pediatric gastroenterologist Ranjan Dohil, M.D.

While this breakthrough made a huge difference for patients like Natalie, who participated in early clinical trials for the drug, it still wasn't the cure she had wished for.

Finding the cure

In 2006, Jerry Schneider introduced the Stacks to Stephanie Cherqui, Ph.D., an ambitious young researcher from France who had helped discover the gene responsible for cystinosis.

"When we first sat down with Stephanie, we had no idea how her novel research ideas would impact us, but we were so impressed by her passion," Stack said. "Today, she is the rock star of our cystinosis community, and we are blown away by her determination to find a cure for our children."

With support from the Cystinosis Research Foundation, Cherqui's research has thrived since that initial meeting. Within a year, the Foundation awarded her a seed grant that enabled her to bring her laboratory to UC San Diego, where she could leverage cutting-edge stem-cell core facilities to discover a potential cure for cystinosis: a stem-cell based gene therapy that works by extracting the patient's own blood stem cells, correcting the mutation that causes cystinosis, then reinfusing the stem cells back into the patient, allowing the corrected gene to reach every organ in the body.

Stephane Cherqui, Ph.D. is director of the Gene Therapy Initiative at UC San Diego. Her groundbreaking work on cystinosis has led to a promising gene therapy for the disease. Credit: UC San Diego Health Sciences

"Nobody thought this was possible," said Cherqui. "This type of gene therapy was still considered science fiction at the time, but we were completely amazed when we tried the approach in mouse models of cystinosis. It prevented the disease in multiple organs, and this gave us the data we needed to pursue clinical trials."

In 2019, the first clinical trial for the gene therapy began, supported by funding from the California Institute for Regenerative Medicine (CIRM). In 2022, Natalie became the fifth patient to receive the treatment at UC San Diego Health.

For Natalie Stack Morgan, the day of her stem cell transplant at UC San Diego represented a new birthday. Credit: Nancy Stack

"It was an emotional day for me as well as my family because it was the day my life would change forever," she said. "It was a huge milestone and I now consider it my new birthday."

While the process was challenging, involving high doses of chemotherapy before the stem cell transplant and a weeks-long hospital stay, the treatment has made a major impact on Natalie.

"I feel great, and I feel very, very blessed and thankful that I had the opportunity to be part of the trial," she said. "Because of the stem cell transplant, I could focus on my future. I was able to get married, have a beautiful baby, which I never thought I would be able to do. I feel like I have more life to live."

Preliminary results of the trial show that five of the six patients had a major reduction in cystine levels in their blood and no serious adverse events related to the therapy.

"This was the first bench-to-bedside gene therapy for rare disease to come entirely from UC San Diego," added Cherqui.

A bench-to-bedside ecosystem

While the cystinosis treatment is well on its way, having been recently licensed to Novartis Pharmaceuticals and advancing to a larger, phase II clinical trial, the GTI is also supporting projects at earlier stages in the hopes of empowering more bench-to-bedside research at UC San Diego.

To help make this happen, the GTI offers centralized resources for researchers to bridge the knowledge gap that often stalls therapeutic development between the lab and the clinic.

"We've organized symposiums, hands-onworkshops, targeted training programs, and promoted partnerships with industry to support investigators to develop their novel gene therapy approaches," added Cherqui.

UC San Diego professor Brian Head (right) is developing a new gene therapy approach for neurodegenerative diseases, including Alzheimer's disease, amyotrophic lateral sclerosis (ALS), and multiple sclerosis. Credit: Kyle Dykes/UC San Diego Health Sciences

GTI also provides seed grants for researchers to get the initial kickstart they need to explore the potential of new gene therapy treatments and gather the data needed to enter clinical trials.

One researcher who received a GTI seed grant is Brian P. Head, Ph.D., a professor of anesthesiology at UC San Diego School of Medicine and research career scientist with the Veteran's Administration. His gene therapy research takes a very different approach compared to Cherqui's. Instead of using stem cells as a vehicle to spread therapeutic genes throughout the body, Head's approach uses a viral vector - a modified virus that doesn't cause disease - to deliver a brain cell-specific neuroprotective gene straight into the brain and spinal cord, offering a new solution for neurodegenerative diseases like Alzheimer's disease, amyotrophic lateral sclerosis (ALS) and multiple sclerosis.

Many other therapeutic approaches to neurodegenerative diseases are based on monogenic targeting, which means correcting a specific type of brain damage caused by a single mutation rather than addressing the broader mechanisms driving the disease. For example, many Alzheimer's disease treatments only focus on removing accumulated proteins in the brain.

However, Head's approach is more fundamental. By delivering a neuroprotective gene directly into the brain, his approach can reprogram the behavior of brain cells, helping them to mitigate neurodegeneration and survive without relying solely on removing harmful proteins. In recent studies, this strategy has shown promise in restoring memory and cognitive abilities when delivered to post-symptomatic animal models of Alzheimer's disease, thus offering hope for a new way to halt or even reverse neurodegeneration.

Further, this approach recently received Investigational New Drug (IND) approval from the FDA, meaning it could enter human clinical trials by the end of this year - a major step in bringing the therapy out of the lab and into the clinic.

"The idea is to help brain cells survive and function even in the face of ongoing damage - whether it's Alzheimer's disease, ALS, or other neurodegenerative conditions caused by injury," said Head. "It's a fundamentally new strategy, and while translating it from animal models to human patients will take time and careful study, I'm optimistic that it could open the door to treatments for a wide range of brain disorders"

Breakthroughs begin with people

The story of gene therapy at UC San Diego is, at its heart, a story about people - patients, families, donors and scientists - working together to turn hope into cures.

Though they're excited about the progress that has been made, the Stack family is not letting up. They are passionate about seeing the impact of their support ripple out from the rarest diseases to more common conditions, such as Alzheimer's, cancer, glaucoma and immune disorders, all of which are being studied by GTI-supported researchers.

As Nancy Stack explains, "We discovered that ideas and discoveries in rare diseases can impact other conditions, and this was a surprise for us. It's exciting to see our small community making an enormous difference."

She also notes that grassroots organizations like the Cystinosis Research Foundation are critical now more than ever in the context of ongoing threats to federal research funding.

GTI Seed Grant Recipients

  • Angels Almenar-Queralt, Pediatrics
    • Assessing the functional impact of an Alzheimer's disease protective SNP in the CD33 microglial gene
  • Steven Dowdy, Cellular and Molecular Medicine
    • Tackling the siRNA and ASO therapeutics delivery problem with new chemistry
  • Brian Head, Anesthesiology
    • Proof-of-concept hominid-suitable AAV.CAP-Mac to deliver neuron-targeted caveolin gene therapy in MS
  • Vivian Hook, Neuroscience and Pharmacology
    • Capthepsin B siRNA gene silencing for development of a new therapeutic approach for Alzheimer's disease (AD), traumatic brain injury (TBI) and related neurological diseases
  • Wonkyu Ju, Ophthalmology
    • A-kinase anchoring protein 1-mediated neuroprotection in glaucoma
  • Dan Kaufman, Regenerative Medicine
    • Targeted virus-like particles for in vivo engineering of lymphocytes for improved anti-tumor activity
  • Ester Kwon, Bioengineering
    • Lipid nanoparticle engineering for in vivo immune cell cancer therapy
  • Loren Looger, Neuroscience
    • De novo design of functional AAV capsids and AAV serotypes with increased payload limit using computational protein design and machine learning
  • Prashant Mali, Bioengineering
    • Engineering and validation of novel AAV variants with enhanced tissue tropism in non-human primates
  • Alysson Muotri, Pediatrics and Cellular and Molecular Medicine
    • Zika virus as a novel gene therapy delivery system
  • Thomas Rogers, Medicine
    • (bnAb)-Engineered B cell response rescue (BEBRR) in immunocompromised systems
  • Gene Yeo, Cellular and Molecular Medicine
    • Novel RNA-targeting therapeutic strategy for ALS
For families like the Stacks living with rare diseases, research represents hope. Thanks in part to a treatment discovered at UC San Diego, Natalie Stack Morgan was able to start her own family. Credit: Nancy Stack

"Research is the reason we have hope in the cystinosis community," she said. "It takes all of us - families, researchers and donors - working together to make an impact. We always tell families: never give up hope, because every breakthrough starts with people who refuse to quit. That's what keeps us moving forward."

Disclosures: Stephanie Cherqui is cofounder, shareholder, and a member of both the Scientific Board and board of directors of Papillon Therapeutics Inc. Stephanie Cherqui serves as a member of the Scientific Review Board and Board of Trustees of the Cystinosis Research Foundation. The terms of this arrangement have been reviewed and approved by the University of California San Diego in accordance with its conflict-of-interest policies. All other authors declare no conflict of interest.

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